plot for GLRT significant results — GLRT_sig

plot the scatter plot for mean change versus variance change of exon psi between two cell groups

Usage

GLRT_sig_plot(
  data,
  gene_col = "gene",
  color_col = NULL,
  mean_diff = "mean_diff",
  var_diff = "var_diff",
  q = "q",
  mean_diff_thresh = 0.15,
  var_diff_thresh = 0.1,
  log_q_thresh = 3
)

Arguments

data: the GLRT result, a dataframe output from genes_groups_GLRT()
gene_col: The name of column in the data which stores the gene name
mean_diff: The name of column in the data which stores the mean difference of the psi distributions
var_diff: The name of column in the data which stores the variance difference of the psi distributions
q: The name of column in the data which stores the q value
mean_diff_thresh: the minimum of mean difference of psi to show the gene name in the scatter plot
var_diff_thresh: the minimum of variance difference of psi to show the gene name in the scatter plot
q_thresh: the minimum of -log(q,10) to show the gene name in the scatter plot

Value

a ggplot object