summarise the site count and gene count for each single cell
Usage
cellGeneSiteCount(splice_site_table, cell_col = "cell", count_col = "count")
Arguments
- splice_site_table
a dataframe of count for splicing sites in each isoform
- cell_col
The name of the column recording the cell barcode
- count_col
The name of the column recording the isoform count in each cell
Value
a list of site count table and gene count table for each cell
A list including two dataframes, the fisrt one records the gene count for each site in each cell,
while the second one record the spliced-in site count.
Details
Due to the truncation, the sites are counted in a censoring way, only
sites between two sites or between a site and the polyA will be treated as spliced out,
otherwise it is censor and won't be counted.