creatSplice_from_df — creatSplice_from

Create a Splice object from the output file from a dataframe.

Usage

creatSplice_from_df(
  df,
  cell = "all",
  gene = "all",
  cell_col = "cell",
  gene_col = "gene",
  iso_col = "isoform",
  exprs_col = "count"
)

Arguments

df: The input dataframe.
cell: The vector of cells to be preserved in the Splice object
gene: The vector of genes to be preserved in the Splice object
cell_col: The colname to for the cell id in the count file
gene_col: The colname to for the gene id in the count file
iso_col: The colname to for the isoform id in the count file

Value

A Splice object

Details

Create a Splice object from the output file from dataframe, the dataframe should contain at least four columns, including cell, gene, isoform and umi count.