createSplice

Create a Splice object from the output file from saveExonList().

Usage

createSplice(
  path,
  cell = "all",
  gene = "all",
  cell_col = "cell",
  gene_col = "gene",
  iso_col = "exons"
)

Arguments

path

The path to store the output files from saveExonList().

cell

The vector of cells to be preserved in the Splice object

gene

The vector of genes to be preserved in the Splice object

cell_col

The colname to for the cell id in the count file

gene_col

The colname to for the gene id in the count file

iso_col

The colname to for the isoform id in the count file

Details

Create a Splice object from the output file from saveExonList().