geneSitesPhi_from_psi
geneSitesPhi_from_psi.Rd
compute phi for exons in a gene from a Splice object
Usage
geneSitesPhi_from_psi(
spliceOb,
gene,
cells = "all",
cell_count_thresh = 30,
exprs_thresh = 10,
iters = 100,
...
)
Arguments
- spliceOb
the Splice object
- gene
name of the target gene
- cells
cells to use in building exon count table
- cell_count_thresh
the minimum number of cells expressing this gene
- exprs_thresh
the minimum gene expression to calculate the exon psi (for unbiased estimation)
- iters
iteration for bootstrap to generate the confidence interval of phi
- ...
Other parameters for geneSitesPsi.base