compute psi for sites in a gene from a Splice object
Usage
geneSitesPsi.base(spliceOb, gene, cells = "all", exprs_thresh = 10, ...)
Arguments
- spliceOb
the Splice object
- gene
name of the target gene
- cells
cells to use in building exon count table
- exprs_thresh
The minimum threshold for the gene expression to estimate the psi
Value
a dataframe contains the psi estimation for each exon in each cell