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compute psi for sites in a gene from a Splice object

Usage

geneSitesPsi.base(spliceOb, gene, cells = "all", exprs_thresh = 10, ...)

Arguments

spliceOb

the Splice object

gene

name of the target gene

cells

cells to use in building exon count table

exprs_thresh

The minimum threshold for the gene expression to estimate the psi

Value

a dataframe contains the psi estimation for each exon in each cell