generic gene_GLRT function for Splice object — gene_GLRT,Splice,character,vector,vector-method • Longcell

an interface function to run GLRT for specified exons in a gene for specified two cell groups from a Splice object.

Usage

# S4 method for Splice,character,vector,vector
gene_GLRT(object, gene, group1, group2, ...)

Arguments

object: the Splice object
gene: the name of specified gene
group1: cells for group 1
group2: cells for group 2
...: parameters specified for geneSiteTable()

Value

a dataframe of the test result. Each line is an exon with p-values and parameters for the psi distributions in two cell populations if they have significant difference