an interface function to run GLRT for all exons in multiple genes
for multiple cell group pairs from a Splice object.
Usage
# S4 method for Splice,character,list,list
genes_groups_GLRT(object, genes, group1s, group2s, ...)
Arguments
- object
the Splice object
- genes
a vector of gene names to do GLRT
- group1s
a named list of cell names, each element should be cells belonging to a group
- group2s
a named list of cell names, each element should be cells belonging to a group
- ...
other parameters for gene_GLRT.base
Value
a dataframe of the test result. Each line is an exon with p-values
and parameters for the psi distributions in two cell populations if they
have significant difference