phiPlot

plot mean psi vs. phi scatter plot for each exon, colored by the confidence interval of phi

Usage

phiPlot(
  data,
  psi_range = c(0.3, 0.7),
  phi_conf_upr = 0.2,
  psi_col = "mean_psi",
  phi_col = "phi",
  phi_conf_col = "phi_conf",
  annot_col = "symbol",
  annot_size = 4
)

Arguments

data

the dataframe of phi, which should include columns for mean psi, phi, phi confidence interval and the exon name

psi_range

Only exons with mean psi within this range will be annotated

phi_conf_upr

Only exons with phi confidence interval lower than this threshold will be annotated

psi_col, phi_col, phi_conf_col, annot_col

The colnames to indicate the mean psi,phi,phi confidence interval and exon annotation within the input data

annot_size

the text size for exon annotation