psiCellPlot

plot psi value in cell embeddings

Usage

psiCellPlot(
  spliceOb,
  gene,
  sites,
  cell_embedding,
  dims = c(1, 2),
  cells = "all",
  exprs_thresh = 10,
  ...
)

Arguments

spliceOb

a Splice object

gene

the name of specified gene

sites

the selected exon to be plot

cell_embedding

A dataframe of cell embedding coordinates

dims

Two dimensions to use to plot cell embedding

cells

the cells to be included in the psi plot

exprs_thresh

the minimum gene expression required for psi calculation

...

parameters for gene_exons_psi.base to calculate psi value

Value

a ggplot object of psi in cell embedding