Prepare the plot data for psiCellPlot
Usage
psiCellPlotData(spliceOb, gene, sites, cells = "all", exprs_thresh = 10, ...)
Arguments
- spliceOb
a Splice object
- gene
the name of specified gene
- sites
the selected exon to be plot
- cells
the cells to be included in the psi plot
- exprs_thresh
the minimum gene expression required for psi calculation
- ...
parameters for geneSitesPsi.base to calculate psi value
Value
a list including the gene count and the psi for the target splicing site to be plotted