sashimi_plot — sashimi_plot • Longcell

generate the sashimi plot for the isoform

Usage

sashimi_plot(
  coverage,
  junction,
  filter_ratio = 20,
  color_id = 1,
  region = NULL,
  lwr = 1,
  upr = 5,
  color_set = NULL
)

coverage: The base count
junction: The junction count
filter_ratio: Threshold to filter out lowly covered base
color_id: The prdefined color set to use, currently there are two sets
region: The xlab annotation for the sashimi plot
lwr, upr: the lower/upper bound of the range
color_set: a vector to record user defined color set to use, should include two colors, one for the base coverage and the other for the junction connection.

a ggplot object.