spliceTable
spliceTable.RdMerge sites into meta sites for a gene
Usage
spliceTable(
data,
strand,
eps = 0.05,
cell_col = "cell",
iso_col = "isoform",
count_col = "count",
polyA_col = "polyA",
split = "|",
sep = ","
)Arguments
- data
A dataframe recording the isoform for a gene
- strand
The strand of the target gene
- eps
The threshold for two sites to be merged
- cell_col
The name of the column recording the cell barcode
- iso_col
The name of the column recording the isoform string
- count_col
The name of the column recording the isoform count in each cell
- polyA_col
The name of the column recording the polyA existence for a read
- split
The chracter to split each exon within the isoform
- sep
The chracter to split each the start and end sites of an exon