Clonotrace is a package for multimodal analysis of single cell RNA-seq data with lineage information, including lineaged-barcoded cells and immune cells. Clonotrace generates an informative clone embedding to show the clonal dynamics, and extend to pseudotime inference and fate driving gene detection.
Installation
The easiest way to get Clonotrace is to install it from Github:
# install.packages("devtools")
devtools::install_github("yuntianf/Clonotrace",dependencies=TRUE)