Function reference • Clonotrace

All functions

DPT_T(): DPT_T

acct(): acct

bin_filter(): bin_filter

bin_filter_profile_mass(): bin_filter_profile_mass

build_edges(): build_edges

ceil_digit(): ceil_digit

cell_clone_coembed(): cell_clone_coembed

cell_knn_matrix_multiplication_parallel(): cell_knn_matrix_multiplication_parallel

cell_knn_matrix_mutiplication(): cell_knn_matrix_mutiplication

clone_2_ot(): clone_2_ot

clone_disance(): clone_disance

clone_dpt(): clone_root

clone_partition(): clone_partition

clone_root(): clone_root

cluster_merge(): cluster_merge

cluster_profile_enrich(): cluster_profile_enrich

cluster_profile_mass(): soft_cluster_gam_fit

combn_dedup(): combn_dedup

compute_transition(): compute_transition

connectivity_coord(): connectivity_coord

dimplot(): dimplot

dis2connec_sparse(): dis2connec_sparse

dis_point_to_edge(): dis_point_to_edge

dis_points_to_edges(): dis_points_to_edges

dismat_mst(): dismat_mst

dist2knn(): dist2knn

dpt(): dpt

embedding2dpt(): embedding2dpt

embedding2knn(): embedding2knn

filter_network(): filter_network

find_mutual_nn(): find_mutual_nn

graph_clone_nn(): graph_clone_nn

graph_clone_ot(): graph_clone_ot

graph_clone_ot_sub(): graph_clone_ot_sub

group_2_min(): group_2_min

is_symmetric(): is_symmetric

knn_between_groups(): knn_between_groups

knn_flat(): knn_flat

label_spreading(): label_spreading

label_spreading_bootstrap(): label_spreading_bootstrap

leiden_dis(): leiden_dis

leiden_embedding(): leiden_embedding

leiden_embedding_fast(): leiden_embedding_fast

link2cluster(): link2cluster

long2sparse(): long2sparse

long2square(): long2square

long2wide(): long2wide

long_symmetry(): long_symmetry

mass_filter(): mass_filter

mat_sparsify(): mat_sparsify

mat_split(): mat_split

mds_from_knn(): mds_from_knn

mnn_dist(): mnn_dist

nearest_knn(): nearest_knn

profile_cluster_DEG(): profile_cluster_DEG

profile_cluster_DEG_permute(): profile_cluster_DEG_permute

profile_multiclusters_DEG(): profile_multiclusters_DEG

ridge_regression(): ridge_regression

scatterpie(): scatterpie

soft_cluster_gam_fit(): soft_cluster_gam_fit

sparse_manupulation(): sparse_manupulation

sparse_norm(): sparse_norm

sync_sparse_rows(): sync_sparse_rows

top_k(): top_k

umap_from_knn(): umap_from_knn

wide2long(): wide2long