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clone_2_ot

clone_2_ot.Rd

Compute Optimal Transport Distance Between Two Clones

Usage

clone_2_ot(distance, group1_mass, group2_mass)

Arguments

distance

A numeric cost matrix of pairwise distances (rows = group 1 cells, cols = group 2 cells).

group1_mass

A numeric vector of mass/probabilities for group 1 (length must equal number of rows in `distance`).

group2_mass

A numeric vector of mass/probabilities for group 2 (length must equal number of columns in `distance`).

Value

A single numeric value representing the OT distance between the two groups.

Details

Calculates the optimal transport (OT) distance between two sets of cells (e.g., clones) based on a cost matrix and their mass distributions. Uses the `transport` package for solving the OT plan.